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1

Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates

Boris Sobolev, Dmitry Filimonov, Alexey Lagunin, Alexey Zakharov, Olga Koborova, Alexander Kel, Vladimir Poroikov

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.30 MB

english, 2010

2

Multivalent N -Acetylgalactosamine-Conjugated siRNA Localizes in Hepatocytes and Elicits Robust RNAi-Mediated Gene Silencing

Nair, Jayaprakash K., Willoughby, Jennifer L. S., Chan, Amy, Charisse, Klaus, Alam, Md. Rowshon, Wang, Qianfan, Hoekstra, Menno, Kandasamy, Pachamuthu, Kel’in, Alexander V., Milstein, Stuart, Taneja,

Journal:

Journal of the American Chemical Society

Year:

2014

Language:

english

File:

PDF, 852 KB

english, 2014

3

Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer

Kel, Alexander, Boyarskikh, Ulyana, Stegmaier, Philip, Leskov, Leonid S., Sokolov, Andrey V., Yevshin, Ivan, Mandrik, Nikita, Stelmashenko, Daria, Koschmann, Jeannette, Kel-Margoulis, Olga, Krull, Mat

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 2.02 MB

english, 2019

4

Exact algorithms for two integer-valued problems of searching for the largest subset and longest subsequence

Kel’manov, Alexander, Khamidullin, Sergey, Khandeev, Vladimir, Pyatkin, Artem

Journal:

Annals of Mathematics and Artificial Intelligence

Year:

2019

File:

PDF, 1.02 MB

2019

5

A Novel 1,2-Migration of Acyloxy, Phosphatyloxy, and Sulfonyloxy Groups in Allenes: Efficient Synthesis of Tri- and Tetrasubstituted Furans

Anna W. Sromek, Alexander V. Kel'in, Vladimir Gevorgyan

Journal:

Angewandte Chemie

Year:

2004

Language:

english

File:

PDF, 128 KB

english, 2004

6

1,2-Migration of the Thio Group in Allenyl Sulfides: Efficient Synthesis of 3-Thio-Substituted Furans and Pyrroles

Joseph T. Kim, Alexander V. Kel'in, Vladimir Gevorgyan

Journal:

Angewandte Chemie

Year:

2003

Language:

english

File:

PDF, 114 KB

english, 2003

7

A Novel 1,2-Migration of Acyloxy, Phosphatyloxy, and Sulfonyloxy Groups in Allenes: Efficient Synthesis of Tri- and Tetrasubstituted Furans

Anna W. Sromek, Alexander V. Kel'in, Vladimir Gevorgyan

Journal:

Angewandte Chemie International Edition

Year:

2004

Language:

english

File:

PDF, 129 KB

english, 2004

8

1,2-Migration of the Thio Group in Allenyl Sulfides: Efficient Synthesis of 3-Thio-Substituted Furans and Pyrroles

Joseph T. Kim, Alexander V. Kel'in, Vladimir Gevorgyan

Journal:

Angewandte Chemie International Edition

Year:

2003

Language:

english

File:

PDF, 114 KB

english, 2003

9

TRANSPATH®—a high quality database focused on signal transduction

Claudia Choi, Mathias Krull, Alexander Kel, Olga Kel-Margoulis, Susanne Pistor, Anatolij Potapov, Nico Voss, Edgar Wingender

Journal:

Comparative and Functional Genomics

Year:

2004

Language:

english

File:

PDF, 309 KB

english, 2004

10

ChemInform Abstract: One-Step Preparation of 1,4-Diketones from Methyl Ketones and α-Bromomethyl Ketones in the Presence of ZnCl2×t-BuOH×Et2NR as a Condensation Agent.

Natali M. Nevar, Alexander V. Kel'in, Oleg G. Kulinkovich

Journal:

Year:

2000

File:

PDF, 39 KB

2000

11

ChemInform Abstract: A Novel Cu-Assisted Cycloisomerization of Alkynyl Imines: Efficient Synthesis of Pyrroles and Pyrrole-Containing Heterocycles.

Alexander V. Kel'in, Anna W. Sromek, Vladimir Gevorgyan

Journal:

Year:

2001

File:

PDF, 33 KB

2001

12

ChemInform Abstract: Efficient Synthesis of 2-Mono- and 2,5-Disubstituted Furans via the CuI-Catalyzed Cycloisomerization of Alkynyl Ketones.

Alexander V. Kel'in, Vladimir Gevorgyan

Journal:

Year:

2002

File:

PDF, 29 KB

2002

13

1,2-Migration of the Thio Group in Allenyl Sulfides: Efficient Synthesis of 3-Thio-Substituted Furans and Pyrroles.

Joseph T. Kim, Alexander V. Kel'in, Vladimir Gevorgyan

Journal:

Year:

2003

File:

PDF, 161 KB

2003

14

Recent Advances in the Synthesis of 1,3-Diketones

Alexander V. Kel'in

Journal:

Year:

2004

File:

PDF, 53 KB

2004

15

A Novel 1,2-Migration of Acyloxy, Phosphatyloxy, and Sulfonyloxy Groups in Allenes: Efficient Synthesis of Tri- and Tetrasubstituted Furans.

Anna W. Sromek, Alexander V. Kel'in, Vladimir Gevorgyan

Journal:

Year:

2004

File:

PDF, 189 KB

2004

16

Recent Advances in the Chemistry of 1,3-Diketones: Structural Modifications and Synthetic Applications

Alexander V. Kel'in, Andrew Maioli

Journal:

Year:

2004

File:

PDF, 57 KB

2004

17

Identification of dominant signaling pathways from proteomics expression data

Roman A. Zubarev, Michael L. Nielsen, Eva M. Fung, Mikhail M. Savitski, Olga Kel-Margoulis, Edgar Wingender, Alexander Kel

Journal:

Journal of Proteomics

Year:

2008

Language:

english

File:

PDF, 329 KB

english, 2008

18

Identification of key mechanisms controlling gene expression in Leishmania infected macrophages using genome-wide promoter analysis

Kais Ghedira, Klaus Hornischer, Tatiana Konovalova, Ahmed-Zaki Jenhani, Alia Benkahla, Alexander Kel

Journal:

Infection, Genetics and Evolution

Year:

2011

Language:

english

File:

PDF, 626 KB

english, 2011

19

Synthesis of benzofurans via Pd2+-catalyzed oxidative cyclization of 2-allylphenols

Alexander I. Roshchin, Sergey M. Kel’chevski, Nikolai A. Bumagin

Journal:

Journal of Organometallic Chemistry

Year:

1998

Language:

english

File:

PDF, 114 KB

english, 1998

20

Aberrant intestinal expression and allelic variants of mucin genes associated with inflammatory bowel disease

Christoph Moehle, Nikolaus Ackermann, Thomas Langmann, Charalampos Aslanidis, Alexander Kel, Olga Kel-Margoulis, Anna Schmitz-Madry, Alexandra Zahn, Wolfgang Stremmel, Gerd Schmitz

Journal:

Journal of Molecular Medicine

Year:

2006

Language:

english

File:

PDF, 660 KB

english, 2006

21

Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of different functional categories

Ravi Shankar, Amit Chaurasia, Biswaroop Ghosh, Dmitry Chekmenev, Evgeny Cheremushkin, Alexander Kel, Mitali Mukerji

Journal:

Molecular Genetics and Genomics

Year:

2007

Language:

english

File:

PDF, 609 KB

english, 2007

22

Integrative content-driven concepts for bioinformatics “beyond the cell”

Edgar Wingender, Torsten Crass, Jennifer D Hogan, Alexander E Kel, Olga V Kel-Margoulis, Anatolij P Potapov

Journal:

Journal of Biosciences

Year:

2007

Language:

english

File:

PDF, 512 KB

english, 2007

23

Novel sphingolipid derivatives promote keratinocyte differentiation

György Paragh, Petra Schling, Peter Ugocsai, Alexander E. Kel, Gerhard Liebisch, Susanne Heimerl, Christoph Moehle, Yvonne Schiemann, Michael Wegmann, Mike Farwick, Norbert M. Wikonkál, József Mandl,

Journal:

Experimental Dermatology

Year:

2008

Language:

english

File:

PDF, 1.16 MB

english, 2008

24

Whole genome transcriptional profiling identifies novel differentiation regulated genes in keratinocytes

György Paragh, Peter Ugocsai, Thomas Vogt, Petra Schling, Alexander E. Kel, Victoria Tarabin, Gerhard Liebisch, Evelyn Orsó, Loránt Markó, Attila Balogh, Tamás Köbling, Éva Remenyik, Norbert M. Wikonk

Journal:

Experimental Dermatology

Year:

2010

Language:

english

File:

PDF, 315 KB

english, 2010

25

Use of chromatin immunoprecipitation to study transcriptional deregulation in cancer cells

Farnham, Peggy, Graveel, Carrie, Kirmizis, Antonis, Bartley, Stephanie, Kel, Alexander, Kel-Margoulis, Olga, Wingender, Edgar, Zhang, Michael, Jatkoe, Tim, Madore, Steven

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 29 KB

english, 2001

26

A Novel Cu-Assisted Cycloisomerization of Alkynyl Imines: Efficient Synthesis of Pyrroles and Pyrrole-Containing Heterocycles

Kel'in, Alexander V., Sromek, Anna W., Gevorgyan, Vladimir

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 44 KB

english, 2001

27

Ablation of Key Oncogenic Pathways by RITA-Reactivated p53 Is Required for Efficient Apoptosis

Vera V. Grinkevich, Fedor Nikulenkov, Yao Shi, Martin Enge, Wenjie Bao, Alena Maljukova, Angela Gluch, Alexander Kel, Olle Sangfelt, Galina Selivanova

Journal:

Year:

2009

Language:

english

File:

PDF, 1.56 MB

english, 2009

28

Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies

Denitsa Alamanova, Philip Stegmaier, Alexander Kel

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.59 MB

english, 2010

29

Short sequence motifs, overrepresented in mammalian conserved non-coding sequences

Simon Minovitsky, Philip Stegmaier, Alexander Kel, Alexey S Kondrashov, Inna Dubchak

Journal:

Year:

2007

Language:

english

File:

PDF, 316 KB

english, 2007

30

Molecular mechanistic associations of human diseases

Philip Stegmaier, Mathias Krull, Nico Voss, Alexander E Kel, Edgar Wingender

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 3.97 MB

english, 2010

31

Metal-Catalyzed 1,2-Shift of Diverse Migrating Groups in Allenyl Systems as a New Paradigm toward Densely Functionalized Heterocycles

Dudnik, Alexander S., Sromek, Anna W., Rubina, Marina, Kim, Joseph T., Kel'i, Alexander V., Gevorgyan, Vladimir

Journal:

Journal of the American Chemical Society

Year:

2008

Language:

english

File:

PDF, 312 KB

english, 2008

32

Efficient Synthesis of 2-Mono- and 2,5-Disubstituted Furans via the CuI-Catalyzed Cycloisomerization of Alkynyl Ketones†

Kel'i, Alexander V., Gevorgyan, Vladimir

Journal:

Journal of Organic Chemistry

Year:

2002

Language:

english

File:

PDF, 56 KB

english, 2002

33

Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells

Alexander Kel, Olga Kel-Margoulis, Vladimir Babenko, Edgar Wingender

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 477 KB

english, 1999

34

Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors

Alexander E. Kel, Olga V. Kel-Margoulis, Peggy J. Farnham, Stephanie M. Bartley, Edgar Wingender, Michael Q. Zhang

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 430 KB

english, 2001

35

Human–chimpanzee promoter comparisons: Property-conserved evolution?

Igor V. Deyneko, Yulia M. Kalybaeva, Alexander E. Kel, Helmut Blöcker

Journal:

Year:

2010

Language:

english

File:

PDF, 315 KB

english, 2010

36

Eukaryotic mRNAs encoding abundant and scarce proteins are statistically dissimilar in many structural features

Alex V Kochetov, Igor V Ischenko, Denis G Vorobiev, Alexander E Kel, Vladimir N Babenko, Lev L Kisselev, Nikolay A Kolchanov

Journal:

Year:

1998

Language:

english

File:

PDF, 78 KB

english, 1998

37

geneXplain — eine integrierte Bioinformatik-Plattform

Wingender, Edgar, Kel, Alexander

Journal:

Year:

2012

Language:

german

File:

PDF, 422 KB

german, 2012

38

Genome wide prediction of HNF4α functional binding sites by the use of local and global sequence context

Alexander E Kel, Monika Niehof, Volker Matys, Rüdiger Zemlin…

Journal:

Year:

2008

Language:

english

File:

PDF, 3.12 MB

english, 2008

39

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information

Masseroli, Marco, Mons, Barend, Bongcam-Rudloff, Erik, Ceri, Stefano, Kel, Alexander, Rechenmann, François, Lisacek, Frederique, Romano, Paolo

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 430 KB

english, 2014

40

MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters

Deyneko, Igor V, Kel, Alexander E, Kel-Margoulis, Olga V, Deineko, Elena V, Wingender, Edgar, Weiss, Siegfried

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 334 KB

english, 2013

41

Highly-Ordered Supportless Three-Dimensional Nanowire Networks with Tunable Complexity and Interwire Connectivity for Device Integration

Rauber, Markus, Alber, Ina, Müller, Sven, Neumann, Reinhard, Picht, Oliver, Roth, Christina, Schökel, Alexander, Toimil-Molares, Maria Eugenia, Ensinger, Wolfgang

Journal:

Year:

2011

Language:

english

File:

PDF, 3.90 MB

english, 2011

42

RECOGNITION OF CIS-REGULATORY ELEMENTS WITH VOMBAT

POSCH, STEFAN, GRAU, JAN, GOHR, ANDRE, BEN-GAL, IRAD, KEL, ALEXANDER E., GROSSE, IVO

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2007

Language:

english

File:

PDF, 621 KB

english, 2007

43

siRNA Conjugates Carrying Sequentially Assembled Trivalent N- Acetylgalactosamine Linked Through Nucleosides Elicit Robust Gene Silencing In Vivo in Hepatocytes

Matsuda, Shigeo, Keiser, Kristofer, Nair, Jayaprakash K., Charisse, Klaus, Manoharan, Rajar M., Kretschmer, Philip, Peng, Chang G., V. Kel’in, Alexander, Kandasamy, Pachamuthu, Willoughby, Jennifer L.

Journal:

ACS Chemical Biology

Year:

2015

Language:

english

File:

PDF, 2.12 MB

english, 2015

44

A compilation of composite regulatory elements affecting gene transcription in vertebrates

Kel, Olga V., Romaschenko, Aida G., Kel, Alexander E., Wingender, Edgar, Kolchanov, Nikolay A.

Journal:

Nucleic Acids Research

Year:

1995

Language:

english

File:

PDF, 736 KB

english, 1995

45

One Step Preparation of 1,4-Diketones from Methyl Ketones and α-Bromomethyl Ketones in the Presence of ZnCl2 · t-BuOH · Et2NR as a Condensation Agent

Nevar, Natali M., Kel'in †, Alexander V., Kulinkovich, Oleg G.

Journal:

Year:

2000

Language:

english

File:

PDF, 48 KB

english, 2000

46

A New Simple Synthesis of Aryl-Substituted 1,4-Diketones

Kel’in, Alexander V., Kulinkovich, Oleg G.

Journal:

Year:

1996

File:

PDF, 264 KB

1996

47

A New Synthesis and Application of 1-Aryl-2,4-diones

Kel'in, Alexander V., Kozyrkov, Yurii Yu.

Journal:

Year:

1998

Language:

english

File:

PDF, 52 KB

english, 1998

48

Recent Advances in the Chemistry of 1,3-Diketones: Structural Modifications and Synthetic Applications

Kel'in, Alexander, Maioli, Andrew

Journal:

Current Organic Chemistry

Year:

2003

Language:

english

File:

PDF, 572 KB

english, 2003

49

Recent Advances in the Synthesis of 1,3-Diketones

Kel'in, Alexander

Journal:

Current Organic Chemistry

Year:

2003

Language:

english

File:

PDF, 414 KB

english, 2003

50

Detecting reliable non interacting proteins (NIPs) significantly enhancing computational prediction of protein-protein interactions using machine learning methods

Srivastava, Aashish, Mazzocco, Giovanni, Kel, Alexander, Wyrwicz, Lucjan, Plewczynski, Dariusz

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

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